Package: abmR 1.0.10

abmR: Agent-Based Models in R

Supplies tools for running agent-based models (ABM) in R, as discussed in Gochanour et al. (2022) <doi:10.1111/2041-210X.14014>. The package contains two movement functions, each of which is based on the Ornstein-Uhlenbeck (OU) model (Ornstein & Uhlenbeck, 1930) <doi:10.1103/PhysRev.36.823>. It also contains several visualization and data summarization functions to facilitate the presentation of simulation results.

Authors:Benjamin Gochanour [aut, cre], Javier Fernandez-Lopez [aut], Andrea Contina [aut]

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abmR.pdf |abmR.html✨
abmR/json (API)

# Install 'abmR' in R:

install.packages('abmR', repos = c('https://workshop-brg.r-universe.dev', 'https://cloud.r-project.org'))

Uses libs:

jags– Just Another Gibbs Sampler for Bayesian MCMC
c++– GNU Standard C++ Library v3

Datasets:

ex_raster - Example Environmental Raster

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.70 score 372 downloads 9 exports 154 dependencies

Last updated 1 years agofrom:7c0edc5d10. Checks:OK: 3 NOTE: 4. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 21 2024
R-4.5-win	NOTE	Nov 21 2024
R-4.5-linux	NOTE	Nov 21 2024
R-4.4-win	NOTE	Nov 21 2024
R-4.4-mac	NOTE	Nov 21 2024
R-4.3-win	OK	Nov 21 2024
R-4.3-mac	OK	Nov 21 2024

Exports:as.species energySIM energySIM_helper energyVIZ get_ex_data moveSIM moveSIM_helper moveVIZ tidy_results

Dependencies:abind askpass base64enc bigD bitops bslib cachem cards class classInt cli clue cluster coda colorspace commonmark cpp11 crosstalk curl DBI deldir dichromat digest dplyr e1071 evaluate fansi farver fastmap fBasics FNN fontawesome Formula fs gargle generics geojsonsf geometries geosphere ggplot2 ggrepel glue googledrive gss gstat gt gtable gtsummary HDInterval highr htmltools htmlwidgets httr igraph intervals isoband jquerylib jsonify jsonlite juicyjuice kableExtra KernSmooth kknn knitr labeling lattice lazyeval leafem leaflet leaflet.providers leafsync lifecycle lwgeom magrittr maps markdown MASS Matrix memoise mgcv mime modeest munsell nlme openssl pillar pkgconfig png polyclip proxy purrr R6 rapidjsonr rappdirs raster RColorBrewer Rcpp reactable reactR rlang rmarkdown rmutil rnaturalearth rpart rstudioapi runjags s2 sass scales sf sfheaders sftime sp spacetime spatial spatstat.data spatstat.geom spatstat.univar spatstat.utils stable stabledist stars statip stringi stringr svglite swfscMisc sys systemfonts table1 terra tibble tidyr tidyselect timeDate timeSeries tinytex tmap tmaptools units utf8 uuid V8 vctrs viridisLite widgetframe withr wk xfun XML xml2 xts yaml zoo

Help page	Topics
Creates object of "species" class for input into moveSIM() and energySIM()	as.species
Runs agent-based model (ABM) movement and energy budget simulations based on environmental data	energySIM
Creates a plot/table of energySIM() results	energyVIZ
Example Environmental Raster	ex_raster
Downloads example NDVI data	get_ex_data
Runs agent-based model (ABM) movement simulations based on environmental data	moveSIM
Creates a plot/table of moveSIM() results	moveVIZ
Prints results from moveSIM() or energySIM() in an easier-to-read table.	tidy_results

Package: abmR 1.0.10

abmR: Agent-Based Models in R

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Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)